[Slackbuilds-users] ugene update

[Marcel Saegebarth]

On 02/09/2016 07:59 PM, Petar Petrov wrote:
> I want to submit an update for my ugene script for -current. However,
> the compiled binary does not run. The program exits with a segmentation
> fault.

Well, took quite will to compile ugene. I think you mean using
`ugene -ui`?

From strace:

$ strace /usr/lib64/ugene/ugeneui
...
open("/usr/lib64/tls/x86_64/libU2Core.so.1", O_RDONLY|O_CLOEXEC) = -1
ENOENT (No such file or directory)
...
open("/usr/lib64/tls/libU2Core.so.1", O_RDONLY|O_CLOEXEC) = -1 ENOENT
(No such file or directory)
...
open("/usr/lib64/x86_64/libU2Core.so.1", O_RDONLY|O_CLOEXEC) = -1 ENOENT
(No such file or directory)
...
open("/usr/lib64/libU2Core.so.1", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No
such file or directory)
...
open("/lib64/tls/x86_64/libU2Core.so.1", O_RDONLY|O_CLOEXEC) = -1 ENOENT
(No such file or directory)
...
open("/lib64/tls/libU2Core.so.1", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No
such file or directory)
...
open("/lib64/x86_64/libU2Core.so.1", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No
such file or directory)
...
open("/lib64/libU2Core.so.1", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such
file or directory)
...
open("/usr/lib64/tls/libU2Core.so.1", O_RDONLY|O_CLOEXEC) = -1 ENOENT
(No such file or directory)
...
open("/usr/lib64/libU2Core.so.1", O_RDONLY|O_CLOEXEC) = -1 ENOENT (No
such file or directory)
writev(2, [{"/usr/lib64/ugene/ugeneui", 24}, {": ", 2}, {"error while
loading shared libra"..., 36}, {": ", 2}, {"libU2Core.so.1", 14}, {": ",
2}, {"cannot open shared object file", 30}, {": ", 2}, {"No such file or
directory", 25}, {"\n", 1}], 10/usr/lib64/ugene/ugeneui: error while
loading shared libraries: libU2Core.so.1: cannot open shared object
file: No such file or directory
) = 138
exit_group(127)                         = ?
+++ exited with 127 +++

libU2core.so resides in /usr/lib64/ugene/ but it never searches
there. Sorry, that's all I can help with right now.

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